# Introduction:
Department

Here are preliminary results of the bibliometric mapping of the 2022 Luxembourg research evaluation. Its purpose is:

The method for the research-field-mapping can be reiviewed here:

Rakas, M., & Hain, D. S. (2019). The state of innovation system research: What happens beneath the surface?. Research Policy, 48(9), 103787.

Seed Articles

The seed articles deemed representative for the active areas of research in the institution, and include authors affiliated with the institution. They can be selected in three ways:

  1. Via bibliographic clustering of the institutions publications and selection of most central articles per cluster (only clsuters where n >= 0.05N). Selection can be found at:https://github.com/daniel-hain/biblio_lux_2022/blob/master/output/seed/scopus_lih_dcr_seed.csv
  2. MAnual selection of relevant publications.
  3. A combination of 1. and 2.

The present analysis is based on the following seed articles:

AU PY TI JI
OUDIN A;BAUS V;BARTHELEMY V… 2021 PROTOCOL FOR DERIVATION OF ORGANOIDS AND PATIENT-DERIVED ORTHOTOPIC XENOGRAFTS FROM GLIOMA PATIEN… STAR. PROTOC.
OIZEL K;TAIT-MULDER J;FERNA… 2020 FORMATE INDUCES A METABOLIC SWITCH IN NUCLEOTIDE AND ENERGY METABOLISM CELL DEATH DIS.
BIOLATO AM;FILALI L;WURZER … 2020 ACTIN REMODELING AND VESICULAR TRAFFICKING AT THE TUMOR CELL SIDE OF THE IMMUNOLOGICAL SYNAPSE DI… INT. REV. CELL MOL. BIOL.
BRETSCHER C;MARCHINI A 2019 H-1 PARVOVIRUS AS A CANCER-KILLING AGENT: PAST, PRESENT, AND FUTURE VIRUSES
GARGIULO E;PAGGETTI J;MOUSS… 2019 HEMATOLOGICAL MALIGNANCY-DERIVED SMALL EXTRACELLULAR VESICLES AND TUMOR MICROENVIRONMENT: THE ART… CELLS
ESKILSSON E;RØSLAND GV;SOLE… 2018 EGFR HETEROGENEITY AND IMPLICATIONS FOR THERAPEUTIC INTERVENTION IN GLIOBLASTOMA NEURO-ONCOLOGY
JANJI B;BERCHEM G;CHOUAIB S 2018 TARGETING AUTOPHAGY IN THE TUMOR MICROENVIRONMENT: NEW CHALLENGES AND OPPORTUNITIES FOR REGULATIN… FRONT. IMMUNOL.
NOMAN MZ;VAN MOER K;MARANI … 2018 CD47 IS A DIRECT TARGET OF SNAI1 AND ZEB1 AND ITS BLOCKADE ACTIVATES THE PHAGOCYTOSIS OF BREAST C… ONCOIMMUNOLOGY
BAHLAWANE C;SCHMITZ M;LETEL… 2017 INSIGHTS INTO LIGAND STIMULATION EFFECTS ON GASTRO-INTESTINAL STROMAL TUMORS SIGNALLING CELL. SIGNAL.
BOURMAUD A;GALLIEN S;DOMON B 2016 PARALLEL REACTION MONITORING USING QUADRUPOLE-ORBITRAP MASS SPECTROMETER: PRINCIPLE AND APPLICATIONS PROTEOMICS

General Overview over articles

Main Indicators: Publications, Authors, Countries (Tabular)

## 
## 
## MAIN INFORMATION ABOUT DATA
## 
##  Timespan                              2016 : 2021 
##  Sources (Journals, Books, etc)        1947 
##  Documents                             14688 
##  Average years from publication        3.33 
##  Average citations per documents       30.8 
##  Average citations per year per doc    6.483 
##  References                            745559 
##  
## DOCUMENT TYPES                     
##  article               11498 
##  article in press      1 
##  book chapter          269 
##  conference paper      48 
##  data paper            20 
##  editorial             9 
##  letter                13 
##  note                  36 
##  retracted             13 
##  review                2714 
##  short survey          67 
##  
## DOCUMENT CONTENTS
##  Keywords Plus (ID)                    49362 
##  Author's Keywords (DE)                20833 
##  
## AUTHORS
##  Authors                               70148 
##  Author Appearances                    130796 
##  Authors of single-authored documents  176 
##  Authors of multi-authored documents   69972 
##  
## AUTHORS COLLABORATION
##  Single-authored documents             198 
##  Documents per Author                  0.209 
##  Authors per Document                  4.78 
##  Co-Authors per Documents              8.9 
##  Collaboration Index                   4.83 
##  
## 
## Annual Scientific Production
## 
##  Year    Articles
##     2016     1898
##     2017     2320
##     2018     2426
##     2019     2669
##     2020     2803
##     2021     2572
## 
## Annual Percentage Growth Rate 6.266151 
## 
## 
## Most Productive Authors
## 
##    Authors        Articles Authors        Articles Fractionalized
## 1         WANG Y       399        WANG Y                     49.8
## 2         WANG J       324        ZHANG Y                    38.1
## 3         ZHANG Y      303        WANG J                     36.8
## 4         LI Y         291        LI Y                       33.3
## 5         LIU Y        267        WANG X                     31.6
## 6         WANG X       267        LIU Y                      30.5
## 7         LI J         235        ZHANG J                    27.9
## 8         ZHANG J      232        LI J                       27.8
## 9         LI X         218        LI X                       26.6
## 10        ZHANG X      211        ZHANG X                    24.3
## 
## 
## Top manuscripts per citations
## 
##                             Paper                                    DOI   TC TCperYear  NTC
## 1  TYANOVA S, 2016, NAT METHODS            10.1038/nmeth.3901            2960       423 51.7
## 2  VIZCAÍNO JA, 2016, NUCLEIC ACIDS RES    10.1093/nar/gkv1145           2696       385 47.1
## 3  VAN NIEL G, 2018, NAT REV MOL CELL BIOL 10.1038/nrm.2017.125          2601       520 66.1
## 4  KOWAL J, 2016, PROC NATL ACAD SCI U S A 10.1073/pnas.1521230113       1696       242 29.6
## 5  MANTOVANI A, 2017, NAT REV CLIN ONCOL   10.1038/nrclinonc.2016.217    1598       266 35.2
## 6  KALLURI R, 2020, SCI                    10.1126/science.aau6977       1596       532 98.6
## 7  TYANOVA S, 2016, NAT PROTOC             10.1038/nprot.2016.136        1502       215 26.2
## 8  HUGO W, 2016, CELL                      10.1016/j.cell.2016.02.065    1482       212 25.9
## 9  TATE JG, 2019, NUCLEIC ACIDS RES        10.1093/nar/gky1015           1394       348 44.7
## 10 KAMISAWA T, 2016, LANCET                10.1016/S0140-6736(16)00141-0 1319       188 23.0
## 
## 
## Corresponding Author's Countries
## 
##           Country Articles   Freq  SCP MCP MCP_Ratio
## 1  USA                3388 0.2450 2461 927     0.274
## 2  CHINA              3334 0.2411 2823 511     0.153
## 3  GERMANY             961 0.0695  507 454     0.472
## 4  JAPAN               602 0.0435  496 106     0.176
## 5  ITALY               552 0.0399  405 147     0.266
## 6  UNITED KINGDOM      503 0.0364  266 237     0.471
## 7  FRANCE              495 0.0358  277 218     0.440
## 8  KOREA               382 0.0276  315  67     0.175
## 9  SPAIN               330 0.0239  204 126     0.382
## 10 CANADA              329 0.0238  217 112     0.340
## 
## 
## SCP: Single Country Publications
## 
## MCP: Multiple Country Publications
## 
## 
## Total Citations per Country
## 
##      Country      Total Citations Average Article Citations
## 1  USA                     135759                     40.07
## 2  CHINA                    71806                     21.54
## 3  GERMANY                  32839                     34.17
## 4  UNITED KINGDOM           22351                     44.44
## 5  FRANCE                   17650                     35.66
## 6  ITALY                    15519                     28.11
## 7  JAPAN                    15157                     25.18
## 8  SWITZERLAND              10577                     45.99
## 9  AUSTRALIA                 9638                     34.06
## 10 SPAIN                     8750                     26.52
## 
## 
## Most Relevant Sources
## 
##                                 Sources        Articles
## 1  SCIENTIFIC REPORTS                               428
## 2  CANCERS                                          335
## 3  ONCOTARGET                                       317
## 4  INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES      287
## 5  NATURE COMMUNICATIONS                            286
## 6  JOURNAL OF PROTEOME RESEARCH                     277
## 7  FRONTIERS IN ONCOLOGY                            218
## 8  FRONTIERS IN IMMUNOLOGY                          203
## 9  MOLECULAR AND CELLULAR PROTEOMICS                191
## 10 PLOS ONE                                         191
## 
## 
## Most Relevant Keywords
## 
##    Author Keywords (DE)      Articles Keywords-Plus (ID)     Articles
## 1     GLIOBLASTOMA                954       HUMAN               11871
## 2     EXOSOMES                    773       HUMANS               9517
## 3     AUTOPHAGY                   732       ARTICLE              9397
## 4     CANCER                      616       FEMALE               7710
## 5     IMMUNOTHERAPY               579       CONTROLLED STUDY     7077
## 6     EXTRACELLULAR VESICLES      572       METABOLISM           6829
## 7     PROTEOMICS                  525       MALE                 6269
## 8     TUMOR MICROENVIRONMENT      456       NONHUMAN             6147
## 9     MASS SPECTROMETRY           422       PRIORITY JOURNAL     5697
## 10    GLIOMA                      375       GENETICS             5154

Main Indicators: Publications, Authors, Countries (Graphical)

Cited references

Top 20 cited references (by corpus documents):

CR n
COX, J., MANN, M., MAXQUANT ENABLES HIGH PEPTIDE IDENTIFICATION RATES, INDIVIDUALIZED P.P.B.-RANGE MASS ACCURACIES AND PROTEOME-WIDE PROTEIN QUANTIFICATION (2008) NAT. BIOTECHNOL., 26, PP. 1367-1372 388
HANAHAN, D., WEINBERG, R.A., HALLMARKS OF CANCER: THE NEXT GENERATION (2011) CELL, 144, PP. 646-674 361
COX, J., NEUHAUSER, N., MICHALSKI, A., SCHELTEMA, R.A., OLSEN, J.V., MANN, M., ANDROMEDA: A PEPTIDE SEARCH ENGINE INTEGRATED INTO THE MAXQUANT ENVIRONMENT (2011) J. PROTEOME RES., 10, PP. 1794-1805 200
TYANOVA, S., TEMU, T., SINITCYN, P., CARLSON, A., HEIN, M.Y., GEIGER, T., MANN, M., COX, J., THE PERSEUS COMPUTATIONAL PLATFORM FOR COMPREHENSIVE ANALYSIS OF (PROTE)OMICS DATA (2016) NAT. METHODS, 13, PP. 731-740 192
COX, J., HEIN, M.Y., LUBER, C.A., PARON, I., NAGARAJ, N., MANN, M., ACCURATE PROTEOME-WIDE LABEL-FREE QUANTIFICATION BY DELAYED NORMALIZATION AND MAXIMAL PEPTIDE RATIO EXTRACTION, TERMED MAXLFQ (2014) MOL. CELL. PROTEOMICS, 13, PP. 2513-2526 179
MACLEAN, B., TOMAZELA, D.M., SHULMAN, N., CHAMBERS, M., FINNEY, G.L., FREWEN, B., KERN, R., MACCOSS, M.J., SKYLINE: AN OPEN SOURCE DOCUMENT EDITOR FOR CREATING AND ANALYZING TARGETED PROTEOMICS EXPERIMENTS (2010) BIOINFORMATICS, 26, PP. 966-968 171
COMPREHENSIVE GENOMIC CHARACTERIZATION DEFINES HUMAN GLIOBLASTOMA GENES AND CORE PATHWAYS (2008) NATURE, 455, PP. 1061-1068 159
COX, J., MANN, M., MAXQUANT ENABLES HIGH PEPTIDE IDENTIFICATION RATES, INDIVIDUALIZED P.P.B.-RANGE MASS ACCURACIES AND PROTEOME-WIDE PROTEIN QUANTIFICATION (2008) NAT BIOTECHNOL, 26, PP. 1367-1372 147
SHARMA, P., ALLISON, J.P., THE FUTURE OF IMMUNE CHECKPOINT THERAPY (2015) SCIENCE, 348, PP. 56-61 132
RAPPSILBER, J., MANN, M., ISHIHAMA, Y., PROTOCOL FOR MICRO-PURIFICATION, ENRICHMENT, PRE-FRACTIONATION AND STORAGE OF PEPTIDES FOR PROTEOMICS USING STAGETIPS (2007) NAT. PROTOC., 2, PP. 1896-1906 130
RAPOSO, G., STOORVOGEL, W., EXTRACELLULAR VESICLES: EXOSOMES, MICROVESICLES, AND FRIENDS (2013) J CELL BIOL, 200, PP. 373-383 128
NIETO, M.A., HUANG, R.Y., JACKSON, R.A., THIERY, J.P., EMT: 2016 (2016) CELL, 166, PP. 21-45 121
HANAHAN, D., WEINBERG, R.A., HALLMARKS OF CANCER: THE NEXT GENERATION (2011) CELL, 144 (5), PP. 646-674 117
VERHAAK, R.G., HOADLEY, K.A., PURDOM, E., WANG, V., QI, Y., WILKERSON, M.D., MILLER, C.R., MESIROV, J.P., INTEGRATED GENOMIC ANALYSIS IDENTIFIES CLINICALLY RELEVANT SUBTYPES OF GLIOBLASTOMA CHARACTERIZED BY ABNORMALITIES IN PDGFRA, IDH1, EGFR, AND NF1 (2010) CANCER CELL, 17, PP. 98-110 111
RAPOSO, G., STOORVOGEL, W., EXTRACELLULAR VESICLES: EXOSOMES, MICROVESICLES, AND FRIENDS (2013) J. CELL BIOL., 200, PP. 373-383 95
COX, J., MANN, M., MAXQUANT ENABLES HIGH PEPTIDE IDENTIFICATION RATES, INDIVIDUALIZED P.P.B.-RANGE MASS ACCURACIES AND PROTEOME-WIDE PROTEIN QUANTIFICATION (2008) NAT. BIOTECHNOL., 26 (12), PP. 1367-1372 93
PETERSON, A.C., RUSSELL, J.D., BAILEY, D.J., WESTPHALL, M.S., COON, J.J., PARALLEL REACTION MONITORING FOR HIGH RESOLUTION AND HIGH MASS ACCURACY QUANTITATIVE, TARGETED PROTEOMICS (2012) MOL. CELL. PROTEOMICS, 11, PP. 1475-1488 86
AEBERSOLD, R., MANN, M., MASS-SPECTROMETRIC EXPLORATION OF PROTEOME STRUCTURE AND FUNCTION (2016) NATURE, 537, PP. 347-355 84
COX, J., MANN, M., MAXQUANT ENABLES HIGH PEPTIDE IDENTIFICATION RATES, INDIVIDUALIZED P.P.B.-RANGE MASS ACCURACIES AND PROTEOME-WIDE PROTEIN QUANTIFICATION (2008) NAT. BIOTECHNOL, 26, PP. 1367-1372 79
LIVAK, K.J., SCHMITTGEN, T.D., ANALYSIS OF RELATIVE GENE EXPRESSION DATA USING REAL-TIME QUANTITATIVE PCR AND THE 2(-DELTA DELTA C(T)) METHOD (2001) METHODS, 25, PP. 402-408 79

Additional analysis

Authors, Themes & Journals

Endnotes

All results are preliminary so far…